PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07027g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 839aa    MW: 93890.5 Da    PI: 6.3178
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07027g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.12.9e-22127228199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L ++D
  Niben101Scf07027g00009.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVARD 209
                               99*****************************7444..44459******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               +v+F   ++++ +l+++++r+
  Niben101Scf07027g00009.1 210 SVLFI--WNEKNQLLLGIRRA 228
                               *****..8889999***9986 PP

2Auxin_resp117.51.1e-38253336183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  Niben101Scf07027g00009.1 253 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 336
                               79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-47111256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-39120242IPR015300DNA-binding pseudobarrel domain
CDDcd100176.89E-20126227No hitNo description
PfamPF023621.5E-20127228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152127229IPR003340B3 DNA binding domain
SMARTSM010193.8E-22127229IPR003340B3 DNA binding domain
PfamPF065075.1E-34253336IPR010525Auxin response factor
PROSITE profilePS5174519.407713797IPR000270PB1 domain
SuperFamilySSF542772.16E-6715787No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MKLSTSGMGQ QAHEGEKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKDT YLPVEFGIPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVARDS VLFIWNEKNQ LLLGIRRAIR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPLYPG TSSYQDSNNE AINRMSWLRG NSGELGPHSV NLQSFGMLPW  420
MQQRVDSTIL PNDLNQQYQA MLATGLQSYG SGDLLKQQLM QFQQPVQYLQ HASSDSSILQ  480
QQQQQVMQQA VHQHMLPAQT QMLSENLQMQ QQQQSNNQSE EQAHQHAYQA AFQIPHDQLQ  540
QRQQPPNIPS PFSTEDFADL NSKFSASVAP SGVPNMLGSF CSERSNSLNI NRTGQSVVIE  600
QPSQQSWISK FTQSQLNTCS NSSPLPTYGK DTLNPRDNCS LDTQNQALFG ASIDSSGLLL  660
PTTVSNVTTT CANISSMPLG MNSGYQNSLY GYVQDSSELL HNAGKNDPPN VSHTFVKVYK  720
SGCVGRSLDI TQFHSYHELR RELGQMFGIE GFLEDPQRSG CQLVFVDREN DILLLGDDPW  780
EAFVNNVWYI KILSPEDVQK LGKEEAESLN HGAVERMSSN SADDRDLVSG MPSLGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601635747388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769535.10.0PREDICTED: auxin response factor 8-like isoform X2
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLK4B5U70.0K4B5U7_SOLLC; Auxin response factor
STRINGSolyc02g037530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38572339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8